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Life-or-death mitochondrial quality control. A novel pathway for DNA mismatch repair. The role of a key player enzyme in cell survival. Read about papers on these topics recently published in the Journal of Biological Chemistry.

Life-or-death mitochondrial quality control

Louisa Howard/Wikimedia Commons

This transmission electron microscope image of a thin section cut through mammalian
lung tissue shows a mitochondrion.

Apoptosis, or programmed cell death, is a critical process for the homeostasis of cell populations. Disturbances to this mechanism can lead to cancer and other immune and neurodegenerative diseases.

Mitochondrial outer-membrane permeabilization, or MOMP, is a part of the apoptosis pathway that involves mitochondria and one way apoptosis can be activated. Researchers recently discovered an additional mechanism involving cells that are exposed to weak cell stressors, which can evade MOMP-dependent cell death, and coined the term “minority MOMP.” So far, scientists know little about MOMP uniformity in cells and the frequency of minority MOMP.

In a recent in the Journal of Biological Chemistry, Yulia Kushnareva of the La Jolla Institute for Immunology and collaborators performed an imaging-based phenotypic small interference RNA screen to identify the genes that affect MOMP response in individual cells. They set up this system to quantify three cellular phenotypes based on specific genes fused to fluorescent proteins — apoptotic cells with mitochondria that went through MOMP, nonapoptotic cells with intact mitochondria, and atypical cells with mitochondria.

The authors identified genes that were downregulated, including genes involved in mitochondrial dynamics and mitophagy — mitochondria degradation by autophagy — which increased MOMP diversity within cells. The researchers further determined several genes involved in mitochondrial quality control, or MQC, were essential to post-MOMP survival. The authors conclude that the MQC system is a key player that helps reduce minority MOMP, making this mechanism a potential target to improve the toxic effects of anticancer drugs.

A novel pathway for DNA mismatch repair

One of the major DNA repair mechanisms is the DNA mismatch repair, or MMR, system, which corrects replication errors that make it past the proofreading process during DNA replication. Mutations in several components of the MMR system can lead to cancer initiation and progression in a multistep process involving repression of tumor suppression genes and oncogene activation. In eukaryotes, the MMR system functions both in an exonuclease 1, or EXO1, dependent and independent fashion. While the EXO1-dependent mechanism is well known, researchers do not yet fully understand the EXO1-independent mechanism.

In a recent Journal of Biological Chemistry , Lyudmila Kadyrova of the Southern Illinois University School of Medicine and a team of researchers identified a novel EXO1-independent MMR mechanism in which the enzyme DNA2 plays a key role. DNA2 is both a nuclease and a helicase, which means it can both cut and unwind DNA strands.

The scientists showed that the nuclease activity of DNA2 is able to promote an EXO1-independent MMR reaction via a mismatch excision-independent mechanism involving DNA polymerase delta specifically. They further determined that the helicase activity of DNA2 is not necessary for its ability to enhance the MMR reaction. In addition, the researchers showed that DNA2 acts in the EXO1-independent MMR reaction by increasing the strand displacement activity of DNA polymerase delta. The authors conclude these results provide a novel mechanism for MMR in an EXO1-independent fashion.

The role of a key player enzyme in cell survival

Glutathione peroxidase 4, or GPx4, is an antioxidant enzyme that directly reduces peroxidized phospholipids in the cell membrane. It is also an essential regulator of ferroptosis — nonapoptotic cell death induced by lipid peroxidation. Researchers believe GPx4 cytosolic isoform plays a key part in inhibiting ferroptosis in somatic cells; however, they do not yet understand the role of the mitochondrial isoform, or mGPx4, in cell survival.

In a recent Journal of Biological Chemistry , Kunihiro Azuma of the ophthalmology department at the University of Tokyo and collaborators describe how they studied cell survival using mice with conditional knockouts, or KOs, for all GPx4 isoforms that present a cone–rod dystrophylike phenotype.

The authors showed that mGPx4 KO mice lose their cone photoreceptors during maturation, whereas rod photoreceptors persisted through maturation but then gradually degenerated. They also showed that the retina of mGPx4 KO mice presented increased levels of peroxidized phosphatidylethanolamine esterified with docosahexaenoic acid.

Overall, the researchers write, “mGPx4 is essential for the maturation of cone photoreceptors, but not for the maturation of rod photoreceptors, although it is still critical for the survival of rod photoreceptors after maturation.”